Class SmithWatermanUserArgumentProcessor.SmithWatermanStartupParams

java.lang.Object
org.biojava.nbio.structure.align.ce.StartupParameters
org.biojava.nbio.structure.align.seq.SmithWatermanUserArgumentProcessor.SmithWatermanStartupParams
Enclosing class:
SmithWatermanUserArgumentProcessor

protected static class SmithWatermanUserArgumentProcessor.SmithWatermanStartupParams extends StartupParameters
  • Constructor Details

    • SmithWatermanStartupParams

      public SmithWatermanStartupParams()
  • Method Details

    • getGapOpen

      public short getGapOpen()
    • setGapOpen

      public void setGapOpen(short gapOpen)
    • getGapExtend

      public short getGapExtend()
    • setGapExtend

      public void setGapExtend(short gapExtend)
    • getMaxRmsd

      public double getMaxRmsd()
    • setMaxRmsd

      public void setMaxRmsd(double maxRmsd)
    • getMinLen

      public int getMinLen()
    • setMinLen

      public void setMinLen(int minLen)
    • toString

      public String toString()
      Overrides:
      toString in class StartupParameters